PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS74560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 439aa    MW: 47811.2 Da    PI: 6.3534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS74560.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13294340455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  EPS74560.1 294 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 340
                 799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3813191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.806290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18293355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.77E-14293343No hitNo description
PfamPF000102.0E-10294340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17294351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
SEFQPSGGDL GIRQTLRSIV DGSDWSYAIY WQVSKSKSGG KSALIWGDGH CQDEEEHAAV  60
ADAVADNNAL RKLVLGKLHS SLDPPEEEGK QLLLAKLDTV SEVSMFFLTS AFCIFPFDKP  120
SVPSQSFNSG RTIWISDSKA CLERYQSRSH LARIAGFETV AFVPSKSGVI ELGSKRSIPE  180
DHNVVRSAQS VVVRTTNHNN HPAKSSLTTA IPKIFGQELA GGRSSAPVNI SFSPKLEDDD  240
DDNGTDHHAA AAIGGGGEDS EAINDQSKED NSFDDQRPRK RGRKPANGRD EPLNHVEAER  300
QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITDLQ TKIGMLEAEK GRNSPPSEFD  360
VVEGHGEDSS SVVRMSWPLE SHPVSGVVKA LRQHQVTPHR STLSVTEGGE VVHTFSIRTT  420
RGADDAQVLK DQLAAALLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-1241911191Transcription factor MYC3
4rqw_B2e-1241911191Transcription factor MYC3
4rs9_A2e-1241911191Transcription factor MYC3
4yz6_A2e-1241911191Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831462.11e-172PREDICTED: transcription factor bHLH3
TrEMBLS8D5600.0S8D560_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000516711e-151(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-109bHLH family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]